CheneBelgiqueV1, Main, Exploration, bibRecord, 000038

Litter Breakdown and Microbial Succession on Two Submerged Leaf Species in a Small Forested Stream

Identifieur interne : 000038 ( Main/Exploration ); précédent : 000037; suivant : 000039

Litter Breakdown and Microbial Succession on Two Submerged Leaf Species in a Small Forested Stream

Auteurs : Molli M. Newman ; Mark R. Liles ; Jack W. Feminella

Source :

PLoS ONE [ 1932-6203 ] ; 2015.

RBID : PMC:4476575

Abstract

Microbial succession during leaf breakdown was investigated in a small forested stream in west-central Georgia, USA, using multiple culture-independent techniques. Red maple (Acer rubrum) and water oak (Quercus nigra) leaf litter were incubated in situ for 128 days, and litter breakdown was quantified by ash-free dry mass (AFDM) method and microbial assemblage composition using phospholipid fatty acid analysis (PLFA), ribosomal intergenic spacer analysis (RISA), denaturing gradient gel electrophoresis (DGGE), and bar-coded next-generation sequencing of 16S rRNA gene amplicons. Leaf breakdown was faster for red maple than water oak. PLFA revealed a significant time effect on microbial lipid profiles for both leaf species. Microbial assemblages on maple contained a higher relative abundance of bacterial lipids than oak, and oak microbial assemblages contained higher relative abundance of fungal lipids than maple. RISA showed that incubation time was more important in structuring bacterial assemblages than leaf physicochemistry. DGGE profiles revealed high variability in bacterial assemblages over time, and sequencing of DGGE-resolved amplicons indicated several taxa present on degrading litter. Next-generation sequencing revealed temporal shifts in dominant taxa within the phylum Proteobacteria, whereas γ-Proteobacteria dominated pre-immersion and α- and β-Proteobacteria dominated after 1 month of instream incubation; the latter groups contain taxa that are predicted to be capable of using organic material to fuel further breakdown. Our results suggest that incubation time is more important than leaf species physicochemistry in influencing leaf litter microbial assemblage composition, and indicate the need for investigation into seasonal and temporal dynamics of leaf litter microbial assemblage succession.

Url:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4476575

DOI: 10.1371/journal.pone.0130801
PubMed: 26098687
PubMed Central: 4476575

Affiliations:

Le document en format XML

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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Litter Breakdown and Microbial Succession on Two Submerged Leaf Species in a Small Forested Stream</title>
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<front><div type="abstract" xml:lang="en"><p>Microbial succession during leaf breakdown was investigated in a small forested stream in west-central Georgia, USA, using multiple culture-independent techniques. Red maple (<italic>Acer rubrum</italic>
) and water oak (<italic>Quercus nigra</italic>
) leaf litter were incubated <italic>in situ</italic>
 for 128 days, and litter breakdown was quantified by ash-free dry mass (AFDM) method and microbial assemblage composition using phospholipid fatty acid analysis (PLFA), ribosomal intergenic spacer analysis (RISA), denaturing gradient gel electrophoresis (DGGE), and bar-coded next-generation sequencing of 16S rRNA gene amplicons. Leaf breakdown was faster for red maple than water oak. PLFA revealed a significant time effect on microbial lipid profiles for both leaf species. Microbial assemblages on maple contained a higher relative abundance of bacterial lipids than oak, and oak microbial assemblages contained higher relative abundance of fungal lipids than maple. RISA showed that incubation time was more important in structuring bacterial assemblages than leaf physicochemistry. DGGE profiles revealed high variability in bacterial assemblages over time, and sequencing of DGGE-resolved amplicons indicated several taxa present on degrading litter. Next-generation sequencing revealed temporal shifts in dominant taxa within the phylum <italic>Proteobacteria</italic>
, whereas γ-<italic>Proteobacteria</italic>
 dominated pre-immersion and α- and β-<italic>Proteobacteria</italic>
 dominated after 1 month of instream incubation; the latter groups contain taxa that are predicted to be capable of using organic material to fuel further breakdown. Our results suggest that incubation time is more important than leaf species physicochemistry in influencing leaf litter microbial assemblage composition, and indicate the need for investigation into seasonal and temporal dynamics of leaf litter microbial assemblage succession.</p>
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Serveur d'exploration sur le chêne en Belgique (avant curation)

Litter Breakdown and Microbial Succession on Two Submerged Leaf Species in a Small Forested Stream

Litter Breakdown and Microbial Succession on Two Submerged Leaf Species in a Small Forested Stream

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